Deprecated dot.case function names — legacy

The package originally used dot.case names. They are kept so that existing scripts keep working, but each call now warns once per session and forwards to its snake_case replacement. Use the new name in new code.

Usage

makeTransparent(...)

Get.batlow(...)

calc.moving.average(...)

basic.heatmap(...)

dendrogram(...)

convert.mouse.to.human(...)

convert.human.to.mouse(...)

GO.function(...)

UMAP.optimise(...)

clean.data.volcano(...)

colour.points.volcano(...)

alpha.points.volcano(...)

size.points.volcano(...)

custom.enhanced.volcano(...)

sc.correlation(...)

correlation.heatmaps(...)

download.TCGA.RNAseq(...)

TCGA.OS(...)

Arguments

...: Passed to the replacement function.

Value

The result of the replacement function.

Details

Old name	Use instead
`makeTransparent()`	`make_transparent()`
`Get.batlow()`	`get_batlow()`
`calc.moving.average()`	`moving_average()`
`basic.heatmap()`	`basic_heatmap()`
`dendrogram()`	`dendrogram_samples()`
`convert.mouse.to.human()`	`convert_mouse_to_human()`
`convert.human.to.mouse()`	`convert_human_to_mouse()`
`GO.function()`	`go_enrichment()`
`UMAP.optimise()`	`umap_optimise()`
`clean.data.volcano()`	`clean_volcano_data()`
`colour.points.volcano()`	`colour_volcano_points()`
`alpha.points.volcano()`	`alpha_volcano_points()`
`size.points.volcano()`	`size_volcano_points()`
`custom.enhanced.volcano()`	`custom_enhanced_volcano()`
`sc.correlation()`	`sc_correlation()`
`correlation.heatmaps()`	`correlation_heatmaps()`
`download.TCGA.RNAseq()`	`download_tcga_rnaseq()`
`TCGA.OS()`	`tcga_survival()`